seqgra
0.0.4

About seqgra

  • Introduction

Main Documentation

  • Usage examples
  • Command line utilities
  • Data definition
  • Model definition
  • Model definitions of common deep learning architectures
  • Simulators, Learners, Evaluators, Comparators
  • ID conventions
  • Format of input data
  • output folder structure

Reference

  • API reference
    • Subpackages
      • seqgra.comparator package
      • seqgra.evaluator package
      • seqgra.learner package
      • seqgra.model package
      • seqgra.parser package
      • seqgra.simulator package
        • Subpackages
          • seqgra.simulator.heatmap package
          • seqgra.simulator.motif package
        • Submodules
          • seqgra.simulator.backgroundgenerator module
          • seqgra.simulator.example module
          • seqgra.simulator.examplegenerator module
          • seqgra.simulator.simulator module
      • seqgra.writer package
    • Submodules
  • Python module index
  • Index
seqgra
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  • seqgra package »
  • seqgra.simulator package

seqgra.simulator package¶

seqgra simulator

Classes:
  • BackgroundGenerator: generates background sequences for simulated examples

  • ExampleGenerator: generates simulated examples

  • Simulator: seqgra simulator

Subpackages¶

  • seqgra.simulator.heatmap package
    • Submodules
      • seqgra.simulator.heatmap.heatmap module
  • seqgra.simulator.motif package
    • Submodules
      • seqgra.simulator.motif.ess module
      • seqgra.simulator.motif.kld module
      • seqgra.simulator.motif.motifinfo module

Submodules¶

  • seqgra.simulator.backgroundgenerator module
  • seqgra.simulator.example module
  • seqgra.simulator.examplegenerator module
  • seqgra.simulator.simulator module
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© Copyright 2021, Konstantin Krismer.

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