seqgra.parser.datadefinitionparser module¶

MIT - CSAIL - Gifford Lab - seqgra

Abstract base class for configuration file parser (using Strategy design pattern)

@author: Konstantin Krismer

class DataDefinitionParser[source]¶

Bases: abc.ABC

abstract get_background(valid_conditions: List[seqgra.model.data.condition.Condition]) → seqgra.model.data.background.Background [source]¶

abstract get_conditions(valid_sequence_elements: List[seqgra.model.data.sequenceelement.SequenceElement]) → List[seqgra.model.data.condition.Condition][source]¶

abstract get_data_definition() → seqgra.model.data.datadefinition.DataDefinition [source]¶

abstract get_data_generation(valid_conditions: List[seqgra.model.data.condition.Condition]) → seqgra.model.data.datageneration.DataGeneration [source]¶

abstract get_description() → str[source]¶

abstract get_grammar_id() → str[source]¶

abstract get_name() → str[source]¶

abstract get_seed() → int[source]¶

abstract get_sequence_elements() → List[seqgra.model.data.sequenceelement.SequenceElement][source]¶

abstract get_sequence_space() → str[source]¶

abstract get_task() → str[source]¶