seqgra.parser.xmldatadefinitionparser module¶

MIT - CSAIL - Gifford Lab - seqgra

Implementation of Parser for XML configuration files (using Strategy design pattern)

@author: Konstantin Krismer

class XMLDataDefinitionParser(config: str, silent: bool = False)[source]¶

Bases: seqgra.parser.datadefinitionparser.DataDefinitionParser

The Strategy interface declares operations common to all supported versions of some algorithm.

The Context uses this interface to call the algorithm defined by Concrete Strategies.

get_background(valid_conditions: List[seqgra.model.data.condition.Condition]) → seqgra.model.data.background.Background [source]¶

get_conditions(valid_sequence_elements: List[seqgra.model.data.sequenceelement.SequenceElement]) → List[seqgra.model.data.condition.Condition][source]¶

get_data_definition() → seqgra.model.data.datadefinition.DataDefinition [source]¶

get_data_generation(valid_conditions: List[seqgra.model.data.condition.Condition]) → seqgra.model.data.datageneration.DataGeneration [source]¶

get_description() → str[source]¶

get_grammar_id() → str[source]¶

get_name() → str[source]¶

get_seed() → int[source]¶

get_sequence_elements() → List[seqgra.model.data.sequenceelement.SequenceElement][source]¶

get_sequence_space() → str[source]¶

get_task() → str[source]¶

validate(xml_config: str) → None[source]¶