seqgra.writer.xmlmodeldefinitionwriter module¶

MIT - CSAIL - Gifford Lab - seqgra

Abstract base class for configuration file writer

@author: Konstantin Krismer

class XMLModelDefinitionWriter[source]¶

Bases: seqgra.writer.modeldefinitionwriter.ModelDefinitionWriter

static attach_architecture_element(root, architecture: seqgra.model.model.architecture.Architecture) → None[source]¶

static attach_general_element(root, model_definition: seqgra.model.model.modeldefinition.ModelDefinition) → None[source]¶

static attach_hp_element(hps_element, hps: Dict[str, str]) → None[source]¶

static attach_labels_element(general_element, labels: List[str]) → None[source]¶

static attach_loss_element(root, loss_hp: Optional[Dict[str, str]]) → None[source]¶

static attach_optimizer_element(root, optimizer_hp: Optional[Dict[str, str]]) → None[source]¶

static attach_tp_element(root, tp_hp: Optional[Dict[str, str]]) → None[source]¶

static create_root_element()[source]¶

static write_model_definition_to_file(model_definition: seqgra.model.model.modeldefinition.ModelDefinition, file_name: str)[source]¶